U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SRX001980: SOLiD System sequencing of Human HapMap individual NA11992 genomic paired-end library
119 ABI_SOLID (AB SOLiD System 2.0) runs: 314.2M spots, 15.7G bases, 112.1Gb downloads

Design: Solid System 2.0 Mate-Paired Library Preparation
Submitted by: Baylor College of Medicine (BCM)
Study: 1000 Genomes Project Pilot 1 (low coverage sequencing of 180 Hapmap individuals from multiple populations.
show Abstracthide Abstract
1000 Genomes first pilot study: Low coverage sequencing of 180 individuals. <P>The purpose of the project is to support the discovery and understanding of genetic variants that influence human disease. Specifically defined goals are (a) the discovery of single nucleotide variants at frequencies of 1% or higher in diverse populations, (b) even more comprehensive discovery (variants down to frequencies of 0.1 - 0.5%) in functional gene regions, and (c) discovery of structural variants, such as copy number variants, other insertions and deletions, and inversions, including sequence-level understanding of breakpoints.</P> <P>The volume of data generated by 1000genomes project is unprecedented.</P> The data is accessible from two mirrored ftp sites at <A HREF="ftp://ftp.1000genomes.ebi.ac.uk">EBI</A> and <A HREF="ftp://ftp-trace.ncbi.nih.gov/1000genomes/">NCBI</A>.
Sample: Coriell GM11992
SAMN00801027 • SRS000052 • All experiments • All runs
Organism: Homo sapiens
Library:
Name: AWG_TG-P1.NA11992_002pA
Instrument: AB SOLiD System 2.0
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Spot descriptor:
forward26  forward

Runs: 119 runs, 314.2M spots, 15.7G bases, 112.1Gb
Run# of Spots# of BasesSizePublished
SRR0097413,133,257156.7M1.1Gb2009-04-22
SRR0097423,193,078159.7M1.1Gb2009-04-22
SRR0097433,161,295158.1M1.1Gb2009-04-22
SRR0097443,210,658160.5M1.2Gb2009-04-22
SRR0097453,098,390154.9M1.1Gb2009-04-22
SRR0097463,178,313158.9M1.1Gb2009-04-22
SRR0097473,172,992158.6M1.1Gb2009-04-22
SRR0097483,139,102157M1.1Gb2009-04-22
SRR0097493,075,389153.8M1.1Gb2009-04-22
SRR0097502,904,036145.2M1Gb2009-04-22
SRR0097513,189,072159.5M1.1Gb2009-04-22
SRR0097523,159,077158M1.1Gb2009-04-22
SRR0097533,203,197160.2M1.2Gb2009-04-22
SRR0097543,271,522163.6M1.2Gb2009-04-22
SRR0097553,283,907164.2M1.2Gb2009-04-22
There are 104 omitted runs. See all runs in Run Selector.

ID:
2053

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...